PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008218880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 204aa    MW: 23364 Da    PI: 4.856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008218880.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.41.6e-3781311128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y ++Pw+L+ k+  e ++wyf+s+r         +nr+t++gyWka g +++v+++
  XP_008218880.1   8 LPPGFRFDPTDEELVVHFLQRKAALLPFHP-DVIPDLHLYPYDPWELDGKALREGNKWYFYSRRT--------QNRVTSNGYWKALGVEEPVITR 93 
                     79*************************999.99**************977677889******984........58******************99 PP

             NAM  96 ....kgelvglkktLvfykgrapk.gektdWvmheyrl 128
                         ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl
  XP_008218880.1  94 sscnSTHKVGMKRYLAFYVGEAPNsGIKTNWIMHEYRL 131
                     88877888**********997765289*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-455171IPR003441NAC domain
PROSITE profilePS5100544.9838172IPR003441NAC domain
PfamPF023652.4E-249131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGDDQFKLPP GFRFDPTDEE LVVHFLQRKA ALLPFHPDVI PDLHLYPYDP WELDGKALRE  60
GNKWYFYSRR TQNRVTSNGY WKALGVEEPV ITRSSCNSTH KVGMKRYLAF YVGEAPNSGI  120
KTNWIMHEYR LSPLSAGDGP SSSSTTTRSS SKRRGHLKTE FSGYVLCRVY ERDEDDDDDD  180
GTELSCLDEV FLSLDDLDEI SLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-38517314166NAC domain-containing protein 19
4dul_A2e-38517314166NAC domain-containing protein 19
1ut7_B2e-38517314166NO APICAL MERISTEM PROTEIN
1ut7_A2e-38517314166NO APICAL MERISTEM PROTEIN
1ut4_B2e-38517314166NO APICAL MERISTEM PROTEIN
1ut4_A2e-38517314166NO APICAL MERISTEM PROTEIN
3swp_D2e-38517317169NAC domain-containing protein 19
3swp_C2e-38517317169NAC domain-containing protein 19
3swp_B2e-38517317169NAC domain-containing protein 19
3swp_A2e-38517317169NAC domain-containing protein 19
3swm_D2e-38517317169NAC domain-containing protein 19
3swm_C2e-38517317169NAC domain-containing protein 19
3swm_B2e-38517317169NAC domain-containing protein 19
3swm_A2e-38517317169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008218880.11e-152PREDICTED: NAC transcription factor NAM-1
SwissprotQ8GWK61e-75NC104_ARATH; NAC domain-containing protein 104
TrEMBLM5XV281e-125M5XV28_PRUPE; Uncharacterized protein
STRINGGLYMA08G19300.17e-90(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-71xylem NAC domain 1